Anderson, S.W., G. L. Rockwell, J. R. Smithson, M. F. Friebel &M. D. Webster, 2001. Water Resources Data for California, Water Year 2000. U.S. Geological Survey Water-Data Report CA-00-4.
Araujo-Lima, C. A., B. R. Forsberg, R. Victoria & L. Martinelli, 1986. Energy sources for detritivorous fishes in the Amazon. Science 234: 1256–1258.
Bayley, P. B., 1989. Aquatic environments in the Amazon Basin, with an analysis of carbon sources, fish production, and yield. In Dodge, D. P. (ed.), Proceedings of the International Large River Symposium. Canadian Special Publication of Fisheries and Aquatic Sciences 106: 399–408.
Bayley, P. B., 1991. The Flood Pulse advantage and the restoration of river-floodplain systems. Regul. Riv.: Res. Manage. 6: 75–86.
Bayley, P. B., 1995. Understanding large river-floodplain ecosystems. BioScience 45: 153–158.
Bennett, W. A. & P. B. Moyle, 1996. Where have all of the fishes gone? Interactive factors producing fish declines in the Sacramento-San Joaquin estuary. In Hollibaugh, J. T. (ed.), San Francisco Bay: The Ecosystem. Pacific Division, American Association for the Advancement of Science, San Francisco, CA: 519–542.
CALFED, 2000. Programmatic Record of Decision. The CALFED Bay Delta Ecosystem Restoration Program, Sacramento, CA. http://www.calfed.water.ca.gov/Archives/ California Department of Water Resources, 1964. Colusa Basin Investigation. Bulletin No. 109. Sacramento, CA.
California Department of Water Resources, 1996. Water quality conditions in the Sacramento-San Joaquin Delta, 1970-1993. Environmental Services Office, Sacramento, CA.
Carignan, R. & J. J. Neiff, 1992. Nutrient dynamics in the floodplain ponds of the Parana River (Argentina) dominated by the water hyacinth Eichhornia crassipes. Biogeochemistry 17: 85–121.
Castillo, M. M., 2000. Influence of hydrological seasonality on bacterioplankton in two neotropical floodplain lakes. Hydrobiologia 437: 57–69.
Cayan, D. R. & D. H. Peterson, 1989. The influence of North Pacific atmospheric circulation on streamflow in the west. In Peterson, D. H. (ed.), Aspects of Climate Variability in the Pacific and Western Americas. American Geophysical Union Geophysical Monograph No. 55: 375-397.
Cayan, D. R., K. T. Redmond & L. G. Riddle, 1999. ENSO and hydrologic extremes in the western United States. J. Climate 12: 2881–2893.
Conomos, T. J., R. E. Smith & J. W. Gartner, 1985. Environmental setting of San Francisco Bay. Hydrobiologia 129: 1–12.
Forsberg, B. R., A. H. Devol, J. E. Richey, L. A. Martinelli & H. dos Santos, 1988. Factors controlling nutrient concentrations in Amazon floodplain lakes. Limnol. Oceanogr. 33: 41–56.
Hager, S.W. & L. E. Schemel, 1997. Dissolved nutrient data for the San Francisco Estuary, California, January through November 1995. U.S. Geological Survey Open-file Report 97-359.
Hamilton, S. K. & W. M. Lewis, Jr., 1987. Causes of seasonality in the chemistry of a lake on the Orinoco River floodplain, Venezuela. Limnol. Oceanogr. 32: 1277–1290.
Hamilton, S. K., W. M. Lewis, Jr. & S. J. Sippel, 1992. Energy sources for aquatic animals in the Orinoco River floodplain: evidence from stable isotopes. Oecologia 89: 324–330.
Hein, T., G. Heiler, D. Pennetzdorfer, P. Riedler, M. Schagerl & F. Schiemer, 1999. The Danube Restoration Project: Functional aspects and planktonic productivity in the floodplain system. Regul. Riv.: Res. Manage. 15: 259–270.
Jassby, A. D., W. J. Kimmerer, S. G. Monismith, C. Armour, J. E. Cloern, T. M. Powell, J. R. Schubel & T. J. Vendlinski, 1995. Isohaline position as a habitat indicator for estuarine populations. Ecol. Appl. 5: 272–289.
Jassby, A. D. & J. E. Cloern, 2000. Organic matter sources and rehabilitation of the Sacramento-San Joaquin Delta (California, USA). Aquat. Conserv.: Mar. Freshwat. Ecosyst. 10: 323–352.
Jassby, A. D., J. E. Cloern & B. E. Cole, 2002. Annual primary production: Patterns and mechanisms of change in a nutrient-rich tidal ecosystem. Limnol. Oceanogr. 47: 698–712.
Junk, W. J., P. B. Bayley & R. E. Sparks, 1989. The Flood Pulse Concept in River-Floodplain Systems. In Dodge, D. P. (ed.), Proceedings of the International Large River Symposium. Canadian Special Publication of Fisheries and Aquatic Sciences 106: 110–127.
Kimmerer, W. J. & J. J. Orsi, 1996. Changes in the zooplankton of the San Francisco Bay estuary since the introduction of the clam, Potamocorbula amurensis. In Hollibaugh, J. T. (ed.), San Francisco Bay The Ecosystem. Pacific Division, American Association for the Advancement of Science, San Francisco, CA: 403–424.
Knowlton, M. F. & J. R. Jones, 1997. Trophic status of Missouri River floodplain lakes in relation to basin type and connectivity. Wetlands 17: 468–475.
Lesack, L. F. W. & J. M. Melack, 1995. Flooding hydrology and mixture dynamics of lake water derived from multiple sources in an Amazon floodplain lake. Wat. Resour. Res. 31: 329–345.
Lewis, Jr., W. M., S. K. Hamilton, M. A. Lasi, M. Rodrigues & J. F. Saunders III, 2000. Ecological determinism on the Orinoco floodplain. BioScience 50: 681–692.
Lewis, Jr., W. M., S. K. Hamilton, M. A. Rodrigues, J. F. Saunders III & M. A. Lasi, 2001. Foodweb analysis of the Orinoco floodplain based on production estimates and stable isotope data. J. N. Am. Benthol. Soc. 20: 241–254.
Lucas, L. V., J. E. Cloern, J. K. Thompson & N. E. Monsen, 2002. Functional variability of habitats within the Sacramento-San Joaquin Delta: restoration implications. Ecol. Appl. 12: 1528–1547.
Marker, A. F., E. A. Nunsch, H. Rai & B. Riemann, 1980. The measurement of photosynthetic pigments in freshwater and standardization of methods: conclusions and recommendations. Arch. Hydrobiol. Beih. Ergebn. Limnol. 14: 91–106.
Mertes, L. A. K., 1997. Documentation and significance of the perirheic zone on inundated floodplains. Wat. Res. Res. 33: 1747–1762.
Monsen, N. E., 2000. A study of sub-tidal transport in Suisun Bay and the Sacramento-San Joaquin Delta, California. Unpublished Ph.D. thesis. Stanford University, Stanford, CA.
Müller-Solger, A. B., A. D. Jassby & D. C. Müller-Navarra, 2002. Nutritional quality of food resources for zooplankton (Daphnia) in a tidal freshwater system (Sacramento-San Joaquin River Delta, USA). Limnol. Oceanogr. 47: 1468–1476.
Nichols, F. H., J. E. Cloern, S. N. Luoma & D. H. Peterson, 1986. The modification of an estuary. Science 231: 525–648.
Orsi, J. J. & W. L. Mecum, 1986. Zooplankton distribution and abundance in the Sacramento-San Joaquin Delta in relation to certain environmental factors. Estuaries 9: 326–339.
Schemel, L. E. & M. H. Cox, 1999. Overview of chemical analyses for the Yolo Bypass. Results and recommendations from 1997 to 1998 Yolo Bypass Studies Attachment B. California Department ofWater Resources, Environmental Services Office, Sacramento, CA.
Schemel, L. E., M. H. Cox, S. W. Hager & T. R. Sommer, 2002. Hydrology and chemistry of floodwaters in the Yolo Bypass, Sacramento River system, California, during 2000. U.S. Geological Survey Water Resources Investigations Report 02-4202. http://pubs.water.usgs.gov/
Sobczak, W. V., J. E. Cloern, A. D. Jassby & A. B. Müller-Solger, 2002. Bioavailability of organic matter in a highly disturbed estuary: The role of detrital and algal resources. Proc. nat. Acad. Sci. U.S.A. 99: 8101–8105.
Sommer, T. R., 2002, The aquatic ecology of the Yolo Bypass floodplain: Evaluation at the species and landscape scales. Unpublished Ph. D. thesis. University of California, Davis, CA.
Sommer, T., R. Baxter & B. Herbold, 1997. Resilience of Splittail in the Sacramento-San Joaquin Estuary. Trans. am. Fish. Soc. 126: 961–976.
Sommer, T. R., W. C. Harrell, M. L. Nobriga, R. Brown, P. Moyle, W. J. Kimmerer & L. E. Schemel, 2001a. California's Yolo Bypass: Evidence that flood control can be compatible with fisheries, wetlands, wildlife and agriculture. Fisheries 26: 6–16.
Sommer, T. R., M. L. Nobriga, W. C. Harrell, W. Batham & W. J. Kimmerer, 2001b. Floodplain rearing of juvenile chinook salmon: evidence of enhanced growth and survival. Can. J. Fish. aquat. Sci. 58: 325–333.
Tockner, K., D. Pennetzdorfer, N. Reiner, F. Schiemer & J. V. Ward, 1999. Hydrological connectivity, and the exchange of organic matter and nutrients in a dynamic river-floodplain system (Danube, Austria). Freshwat. Biol. 41: 521–535.
Tockner, K., F.Malard & J. V. Ward, 2000. An extension of the flood pulse concept. Hydrol. Proc. 14: 2861–2883.
Unrein, F., 2002. Changes in phytoplankton community along a transversal section of the Lower Parana floodplain, Argentina. Hydrobiologia 468: 123–134.
Van den Brink, F.W. B., J. P. H.M. de Leeuw, G. Van der Velde & G. Verheggen, 1993. Impact of hydrology on the chemistry and hytoplankton development in floodplain lakes along the Lower Rhine and Meuse. Biogeochemistry 19: 103–128.
Van den Brink, F. W. B., M. M. Van Katwijk & G. Van der Velde, 1994. Impact of hydrology on the phyto-and zooplankton community composition in floodplain lakes along the lower Rhine and Meuse. J. Plankton Res. 16: 351–371.