Abstract
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The study would be helpful in understanding the synchronization of genes of a pathway and its effect on carbon metabolism which can be further utilized for better agronomic performance.
Abstract
Finger millet (Eleusine coracana) is a C4 crop with high nitrogen use efficiency (NUE) said to be organic by default. Being carbon and nitrogen mutually exclusive, in the present study, it was investigated how light regulates the expression of genes of carbon metabolism and photosynthesis in two finger millet genotypes (GE 3885 and GE 1437) with differing grain protein content (13.8 and 6.2 %). Different genes associated with carbon metabolism were isolated (Cab, RBCS, PEPC, PPDK, PEPC-k, ME, SPS, PK, 14-3-3 and SnRK1) and the co-expression of Dof1 and these genes was investigated under different light–dark conditions. The deduced protein sequences of isolated genes showed relationship of marked variations with their homolog which might corresponds to difference in photosynthetic efficiency between finger millet and other plants. In 24 h day–night conditions, the identified genes exhibited diurnal rhythm in both genotypes with different time of peak expression. In dark, the expression of identified genes in both genotypes oscillated with varied amplitude indicating their control by an endogenous clock. However, Cab, RBCS and PPDK showed no oscillations suggesting that genes are light inducible. Exceptionally, ME transcript showed differential response within genotypes. Upon illumination, genes were induced within the measured period indicating that light is a signal involved in the entrainment of these genes. Exception was ME and SnRK1 in GE 1437. We conclude that expression of Dof1 in higher grain protein genotype was more consistent with the expression of carbon metabolism genes under study suggesting that Dof1 differentially regulates the expression of these light inducible genes and simultaneously controls the grain protein content in finger millet genotypes.
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Abbreviations
- Cab:
-
Chlorophyll a/b binding protein
- RBCS:
-
Rubisco
- PEPC:
-
Phosphoenol pyruvate carboxylase
- PEPC-k:
-
Phosphoenol pyruvate carboxykinase
- ME:
-
Malic enzyme
- SPS:
-
Sucrose phosphate synthase
- PK:
-
Pyruvate kinase
- PPDK:
-
Pyruvate dikinase
- Dof:
-
DNA binding with one finger
References
Ainsworth EA, Long SP (2005) What have we learned from 15 years of free-air CO2 enrichment (FACE)? A meta-analytic review of the responses of photosynthesis, canopy. New Phytol 165:351–371
Baena-Gonzalez E, Sheen J (2008) Convergent energy and stress signaling. Trends Plant Sci 13:474–482
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K (2005) Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J 42:567–585
Contento AL, Kim S-J, Bassham DC (2004) Transcriptome profiling of the response of Arabidopsis suspension culture cells to Suc starvation. Plant Physiol 135:2330–2347
Fu H, Subramanian RR, Masters SC (2000) 14-3-3 Proteins: structure, function, and regulation. Annu Rev Pharmacol Toxicol 40:617–647
Gupta N, Gupta AK, Kumar A (2011) Spatial distribution pattern analysis of Dof1 transcription factor in different tissues of three Eleusine coracana genotypes differing in their grain protein, yield and photosynthetic efficiency. Mol Biol Rep 39:2089–2095
Gupta AK, Gaur VS, Gupta S, Kumar A (2013) Nitrate signals determine the sensing of nitrogen through differential expression of genes involved in nitrogen uptake and assimilation in finger millet. Funct Integr Genomics 13:179–190
Hayes KR, Beatty M, Meng X, Simmons CR, Habben JE, Danilevskaya ON (2010) Maize global transcriptomics reveals spervasive leaf diurnal rhythms but rhythms in developing ears are largely limited to the core oscillator. PLoS One 5(9):12887
Hotta CT, Gardner MJ, Hubbard KE, Baek SJ, Dalchau N, Suhita D (2007) Modulation of environmental responses of plants by circadian clocks. Plant Cell Environ 30:333–349
Kumar R, Taware R, Gaur VS, Guru SK, Kumar A (2009) Influence of nitrogen on the expression of TaDof1 transcription factor in wheat and its relationship with photo synthetic and ammonium assimilating efficiency. Mol Biol Rep 36:2209–2220
Kumar A, Kanwal P, Gupta AK, Singh BR, Gaur VS (2013) A full-length Dof1 transcription factor of finger millet and its response to a circadian cycle. Plant Mol Biol Rep 32:419–427. doi:10.1007/s11105-013-0653-5
McClung CR (2001) Circadian rhythms in plants. Annu Rev Plant Physiol Plant Mol Biol 52:139–162
Millar AJ (2004) Input signals to the plant circadian clock. J Exp Bot 55:277–283
Miyao M (2003) Molecular evolution and genetic engineering of C4 photosynthetic enzymes. J Exp Bot 381:179–189
Schultz TF, Kiyosue T, Yanovsky M, Wada M, Kay SA (2001) A role for LKP2 in the circadian clock of Arabidopsis. Plant Cell 13:2659–2670
Sheen J (1999) C4 gene expression. Ann Rev Pl Physiol Pl Mol Biol 50:187–217
Sinclair TR, Purcell LC, Sneller CH (2004) Crop transformation and the challenge to increase yield potential. Trends in Plant Sci 9:70–75
Stayton M, Brosio P, Dunsmuir P (1989) Photosynthetic genes of petunia (Mitchell) are differentially expressed during the diurnal cycle. Plant Physiol 89:776–782
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599
Wang J, Li R (2008) Integration of C4-specific ppdk gene of echinochloa to C3 upland rice and its photosynthesis characteristics analysis. African J Biotechnol 7:783–787
Yanagisawa S, Sheen J (1998) Involvement of maize Dof zinc finger proteins in tissue-specific and light-regulated gene expression. Plant Cell 10:75–89
Yanagisawa S, Akiyama A, Kisaka H, Uchimiya H, Miwa T (2004) Metabolic engineering with Dof1 transcription factor in plants: improved nitrogen assimilation and growth under low-nitrogen conditions. PNAS USA 101:7833–7838
Yang X, Lee WH, Sobott F, Papagrigoriou E, Robinson CV, Grossmann JG, Sundstrom M, Doyle DA, Elkins JM (2006) Structural basis for protein–protein interactions in the 14-3-3 protein family PNAS USA. Proc Natl Acad Sci USA 103:17237–17242
Yang J, Yang MF, Wang D, Chen F, Shen SH (2010) Jcdof1, a Dof transcription factor gene is associated with the light mediated circadian clock in Jatropha curcas. Physiol Plant 139:324–334
Yang J, Yang MF, Zhan WP, Chen F, Shen SH (2011) A putative flowering-time-related Dof transcription factor gene, JcDof3, is controlled by the circadian clock in Jatropha curcas. Plant Sci 181:667–674
Acknowledgments
We thank the Department of Biotechnology (DBT), Govt. of India for providing the financial support. Financial assistance provided by University Grant Commission (UGC) and Department of Science and Technology (DST) to PK and SG, respectively, is duly acknowledged. The support provided by Director, Experiment Station, G.B. Pant University of Agriculture and Technology, Pantnagar is also thankfully acknowledged.
Conflict of interest
This is to certify that the reported work in the paper entitled “Identification of genes involved in carbon metabolism from Eleusine coracana (L.) for understanding their light mediated entrainment and regulation”, submitted for the publication is an original one and has not been submitted for the publication elsewhere. I further certify that proper citations to the previously reported work have been given and no data/tables/figures have been quoted verbatim from other publications without giving due acknowledgement and without the permission of the author(s). The consent of all coauthors of this paper has been taken for submitting the paper to the “Plant Cell Reports”.
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Communicated by C. F. Quiros.
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Kanwal, P., Gupta, S., Arora, S. et al. Identification of genes involved in carbon metabolism from Eleusine coracana (L.) for understanding their light-mediated entrainment and regulation. Plant Cell Rep 33, 1403–1411 (2014). https://doi.org/10.1007/s00299-014-1625-4
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DOI: https://doi.org/10.1007/s00299-014-1625-4