Abstract
Purpose
Emerging and re-emerging viral infections are accountable for fatal outbreaks across the globe. In the light of the COVID-19 catastrophe and mpox exigency, the gaps in prophylactic measures have been envisaged. Emerging and re-emerging infections like poxviruses, Zika, Marburg, Ebola, Hanta, Nipah viruses have further challenged the healthcare sector by putting additional burden on therapeutic and diagnostic limitations. In the present review we also highlighted potential implications of artificial intelligence for long term solutions.
Methods
Artificial Intelligence (AI) and Machine Learning (ML)-based models have shown promise in accelerating the discovery of new antivirals or potential vaccine candidates. Deep learning (DL) based algorithms can integrate prodigious global data comprising epidemiology, genomics, pathology and molecular behaviour. Subsequently, support vector machine/ random forest/ neural network guided interpretations can comprehensively compile the available datasets for therapeutic and diagnostic predictions.
Results
The present review compiled the various AI-based algorithms and servers which were used for modelling studies as well as prophylactic measures during recent viral outbreaks. The impact of AI on surveillance, outcome prediction, patient monitoring, genomic tracking, clinical assistance, therapeutic screening, drug/ vaccine design and other experimental studies were emphasized.
Conclusions
The present review not only highlighted public-health management models but also provide leads in potential therapeutic targets as well as vaccine/ antiviral candidates. To support the context, the issues with existing therapeutic strategies are also overviewed and the prospects were identified. This review discusses a wide range of applications of AI and ML pertaining to the clinical domain.
Similar content being viewed by others
Data availability
The data associated with the manuscript are included in the manuscript.
Code availability
Not applicable.
References
Mukherjee S. Emerging infectious diseases: epidemiological perspective. Indian J Dermatol India. 2017;62:459–67.
McFee RB. Emerging infectious diseases – overview. Disease-a-Month. Elsevier. 2018;64:163–9.
Dharsan R, Geetha RV, Lakshmi T. Emerging and re-emerging virus. Indian J Forensic Med Toxicol. 2020;14:4515–21.
April O, States U, States U, Control D, S-oiv T, General TD- et al. Recent Trends in Emerging Infectious Diseases. Int J Heal Sci Qassim Univ II 1430H) Int J Heal Sci. 2009;3.
Burrell CJ, Howard CR, Murphy FA. Emerging Virus diseases. Fenner White’s Med Virol. 2017;217–25.
Bankar NJ, Tidake AA, Bandre GR, Ambad R, Makade JG, Hawale DV. Emerging and re-emerging viral infections: an Indian perspective. Cureus. 2022;14.
Lindahl JF, Grace D, Strand T. The consequences of human actions on risks for infectious diseases: a review. Infect Ecol Epidemiol. 2015;5:1–11.
Richt JA, Feldmann H. Emerging zoonoses: recent advances and future challenges. Zoonoses Public Health. 2009;56:257.
Recht J, Schuenemann VJ, Sánchez-Villagra MR. Host diversity and origin of zoonoses: the ancient and the new. Animals. 2020;10:1–14.
Spernovasilis N, Tsiodras S, Poulakou G. Emerging and re-emerging infectious diseases: Humankind’s companions and competitors. Microorganisms. 2022;10:1–5.
Patel A, Bilinska J, Tam JCH, Da Silva Fontoura D, Mason CY, Daunt A et al. Clinical features and novel presentations of human monkeypox in a central London centre during the 2022 outbreak: descriptive case series. BMJ. 2022.
Molero-Abraham M, Glutting JP, Flower DR, Lafuente EM, Reche PA. EPIPOX: Immunoinformatic Characterization of the Shared T-Cell Epitome between Variola Virus and Related Pathogenic Orthopoxviruses. J Immunol Res. 2015;2015.
Kosfeld T, McMillan J, Dipaolo RJ, Hou J, Ahn TH. Performance evaluation of viral infection diagnosis using T-Cell receptor sequence and Artificial Intelligence. Proc 11th ACM Int Conf Bioinformatics, Comput Biol Heal Informatics, BCB 2020. Association for Computing Machinery, Inc; 2020.
Kavvas ES, Catoiu E, Mih N, Yurkovich JT, Seif Y, Dillon N et al. Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance. Nat Commun Springer US; 2018;9.
Agrebi S, Larbi A. Use of artificial intelligence in infectious diseases. Artif. Intell. Precis. Heal. Elsevier Inc.; 2020.
Meo SA, Jawaid SA. Human monkeypox: fifty-two years based analysis and updates. Pakistan J Med Sci. 2022;38:1416–9.
Lalmuanawma S, Hussain J, Chhakchhuak L. Applications of machine learning and artificial intelligence for Covid-19 (SARS-CoV-2) pandemic: a review. Chaos, Solitons and fractals. Volume 139. Elsevier Ltd; 2020. p. 110059.
Rizk JG, Lippi G, Henry BM, Forthal DN, Rizk Y. Prevention and Treatment of Monkeypox. Drugs. 2022;82:957–63.
Swetha RG, Basu S, Ramaiah S, Anbarasu A. Multi-epitope Vaccine for Monkeypox using Pan-genome and Reverse Vaccinology approaches. Viruses. 2022;14:2504.
Bunge EM, Hoet B, Chen L, Lienert F, Weidenthaler H, Baer LR, et al. The changing epidemiology of human monkeypox-A potential threat? A systematic review. PLoS Negl Trop Dis. 2022;16:e0010141.
MacGregor H. Social dimensions of monkeypox: gaps and priority questions? World Health Organization; 2022.
Ibrahima Soce Fall. Building a resilient research architecture and capability to protect us all-WHO Monkeypox research. World Health Organization; 2022.
Amer F, Khalil HES, Elahmady M, ElBadawy NE, Zahran WA, Abdelnasser M et al. Mpox: Risks and approaches to prevention. J Infect Public Health [Internet]. 2023;16:901–10. Available from: https://linkinghub.elsevier.com/retrieve/pii/S1876034123001119.
Harapan H, Ophinni Y, Megawati D, Frediansyah A, Mamada SS, Salampe M et al. Monkeypox: A Comprehensive Review. Viruses [Internet]. 2022;14:2155. Available from: https://www.mdpi.com/1999-4915/14/10/2155.
Kann BH, Hosny A, Aerts HJWL. Artificial intelligence for clinical oncology. Cancer Cell. 2021;39:916–27.
Jaradat AS, Al Mamlook RE, Almakayeel N, Alharbe N, Almuflih AS, Nasayreh A, et al. Automated monkeypox skin lesion detection using deep learning and transfer learning techniques. Int J Environ Res Public Health. 2023;20:4422.
Thieme AH, Zheng Y, Machiraju G, Sadee C, Mittermaier M, Gertler M, et al. A deep-learning algorithm to classify skin lesions from mpox virus infection. Nat Med. 2023;29:738–47.
Vega C, Schneider R, Satagopam V. Analysis: flawed datasets of Monkeypox skin images. J Med Syst. 2023;47:37.
Patel CN, Mall R, Bensmail H. AI-driven drug repurposing and binding pose meta dynamics identifies novel targets for monkeypox virus. J Infect Public Health. 2023;16:799–807.
Bragazzi NL, Han Q, Iyaniwura SA, Omame A, Shausan A, Wang X et al. Adaptive changes in sexual behavior in the high-risk population in response to human monkeypox transmission in Canada can help control the outbreak: insights from a two‐group, two‐route epidemic model. J Med Virol. 2023.
Saleh AI, Rabie AH. Human monkeypox diagnose (HMD) strategy based on data mining and artificial intelligence techniques. Comput Biol Med. 2023;152:106383.
Ahsan MM, Uddin MR, Ali MS, Islam MK, Farjana M, Sakib AN, et al. Deep transfer learning approaches for Monkeypox disease diagnosis. Expert Syst Appl. 2023;216:119483.
Phalak P, Tomba E, Jehoulet P, Kapitan-Gnimdu A, Soladana PM, Vagaggini L, et al. Digital Twin Implementation for Manufacturing of Adjuvants. Processes. 2023;11:1717.
Askin S, Burkhalter D, Calado G, El Dakrouni S. Artificial Intelligence Applied to clinical trials: opportunities and challenges. Health Technol (Berl). 2023;13:203–13.
Weissler EH, Naumann T, Andersson T, Ranganath R, Elemento O, Luo Y et al. Correction to: The role of machine learning in clinical research: transforming the future of evidence generation (Trials, (2021), 22, 1, (537), https://doi.org/10.1186/s13063-021-05489-x). Trials. Trials; 2021;22:1–15.
Srija K, Prithvi PPR, Saxena A, Grover A, Chandra S, Jain SJ. Artificial Intelligence in Personalized Medicine. Artif Intell Mach Learn Healthc. 2021;57–69.
Johnson KB, Wei WQ, Weeraratne D, Frisse ME, Misulis K, Rhee K, et al. Precision Medicine, AI, and the future of Personalized Health Care. Clin Transl Sci. 2021;14:86–93.
Chadaga K, Prabhu S, Sampathila N, Nireshwalya S, Katta SS, Tan R-S, et al. Application of Artificial Intelligence techniques for Monkeypox: a systematic review. Diagnostics. 2023;13:824.
Dildar M, Akram S, Irfan M, Khan HU, Ramzan M, Mahmood AR et al. Skin cancer detection: a review using deep learning techniques. Int J Environ Res Public Health. 2021;18.
Sarangi L, Mohanty MN, Pattanayak S. Design of MLP Based Model for Analysis of Patient Suffering from Influenza. Procedia Comput Sci the Author(s). 2016;92:396–403.
Men L, Ilk N, Tang X, Liu Y. Multi-disease prediction using LSTM recurrent neural networks. Expert Syst Appl Elsevier Ltd. 2021;177:114905.
Thornton JM, Laskowski RA, Borkakoti N. AlphaFold heralds a data-driven revolution in biology and medicine. Nat Med Springer US. 2021;27:1666–9.
Trunfio TA, Scala A, Giglio C, Rossi G, Borrelli A, Romano M, et al. Multiple regression model to analyze the total LOS for patients undergoing laparoscopic appendectomy. BMC Med Inform Decis Mak BioMed Central. 2022;22:1–8.
Edinger A, Valdez D, Walsh-Buhi E, Trueblood JS, Lorenzo-Luaces L, Rutter LA et al. Misinformation and Public Health Messaging in the Early Stages of the Mpox Outbreak: Mapping the Twitter Narrative With Deep Learning. J Med Internet Res [Internet]. 2023;25:e43841. Available from: https://www.jmir.org/2023/1/e43841.
Santosh KC. AI-Driven tools for Coronavirus Outbreak: need of active learning and Cross-population Train/Test models on Multitudinal/Multimodal Data. J Med Syst Journal of Medical Systems. 2020;44:1–5.
Rahmatizadeh S, Valizadeh-Haghi S, Dabbagh A. The role of artificial intelligence in management of critical COVID-19 patients. J Cell Mol Anesth. 2020;5:16–22.
Imran A, Posokhova I, Qureshi HN, Masood U, Riaz MS, Ali K et al. AI4COVID-19: AI enabled preliminary diagnosis for COVID-19 from cough samples via an app. Informatics Med Unlocked. Elsevier Ltd; 2020;20:100378.
Leiner T, Bennink E, Mol CP, Kuijf HJ, Veldhuis WB. Bringing AI to the clinic: blueprint for a vendor – neutral AI deployment infrastructure. Insights imaging. Berlin Heidelberg: Springer; 2021. pp. 1–11.
Iwendi C, Bashir AK, Peshkar A, Sujatha R, Chatterjee JM, Pasupuleti S, et al. COVID-19 patient health prediction using boosted random forest algorithm. Front Public Heal. 2020;8:1–9.
Braun M, Hummel P, Beck S, Dabrock P. Primer on an ethics of AI-based decision support systems in the clinic. J Med Ethics. 2021;47:E3.
Battineni G, Chintalapudi N, Amenta F. Ai Chatbot design during an epidemic like the novel coronavirus. Healthc. 2020;8.
Yan L, Zhang H-T, Goncalves J, Xiao Y, Wang M, Guo Y et al. A machine learning-based model for survival prediction in patients with severe COVID-19 infection. medRxiv. 2020;2020.02.27.20028027.
Vijayan RSK, Kihlberg J, Cross JB, Poongavanam V. Enhancing preclinical drug discovery with artificial intelligence. Drug Discov Today the Author(s). 2022;27:967–84.
Abdulla A, Wang B, Qian F, Kee T, Blasiak A, Ong YH, et al. Project IDentif.AI: harnessing Artificial Intelligence to rapidly optimize combination Therapy Development for Infectious Disease intervention. Adv Ther. 2020;3:2000034.
Ong E, Cooke MF, Huffman A, Xiang Z, Wong MU, Wang H et al. Vaxign2: The second generation of the first Web-based vaccine design program using reverse vaccinology and machine learning. Nucleic Acids Res. Oxford University Press; 2021;49:W671–8.
Thomas S, Abraham A, Baldwin J, Piplani S, Petrovsky N. Artificial Intelligence in Vaccine and Drug Design. Methods Mol Biol. 2022;2410:131–46.
Pfab J, Phan NM, Si D. DeepTracer for fast de novo cryo-EM protein structure modeling and special studies on cov-related complexes. Proc Natl Acad Sci U S A. 2021;118.
Jumper J, Evans R, Pritzel A, Green T, Figurnov M, Ronneberger O, et al. Highly accurate protein structure prediction with AlphaFold. Nature. 2021;596:583–9.
Sahoo D, Katkar GD, Khandelwal S, Behroozikhah M, Claire A, Castillo V, et al. EBioMedicine AI-guided discovery of the invariant host response to viral pandemics. EBioMedicine Elsevier B V. 2021;68:103390.
Mitesh P, Malvi S, Mohd A. Artificial intelligence (AI) in monkeypox infection prevention. J Biomol Struct Dyn Taylor & Francis. 2022;0:1–5.
Arora G, Joshi J, Mandal RS, Shrivastava N, Virmani R, Sethi T. Artificial intelligence in surveillance, diagnosis, drug discovery and vaccine development against covid-19. Pathogens. 2021;10.
Basu S, Ramaiah S, Anbarasu A. In-silico strategies to combat COVID-19: a comprehensive review. Biotechnol Genet Eng Rev. 2021;37:64–81.
Sato RC. esa. Disease management with ARIMA model in time series. Einstein (Sao Paulo). 2013;11:128–31.
Khafaga DS, Ibrahim A, El-Kenawy E-SM, Abdelhamid AA, Karim FK, Mirjalili S, et al. An Al-Biruni Earth Radius optimization-based deep convolutional neural network for classifying Monkeypox Disease. Diagnostics. 2022;12:2892.
Acknowledgements
The authors would like to acknowledge the management of VIT, Vellore, for providing the necessary facilities to carry out the research. RGS would like to thank the Indian Council of Medical Research, New Delhi, for the Research Associateship [IRIS ID: 2021–8220]. The authors gratefully acknowledge ICMR for the research grant (Project number: AMR/Adhoc/290/2022-ECD-II).
Funding
The authors declare that no funds, grants, or other support were received during the preparation of this manuscript.
Author information
Authors and Affiliations
Contributions
Conceptualization: Rayapadi G. Swetha, Sudha Ramaiah, and Anand Anbarasu; Data curation: RC Theijeswini, Rayapadi G. Swetha, and Soumya Basu; Writing-original draft preparation: RC Theijeswini, Rayapadi G. Swetha, and Soumya Basu; Validation: Rayapadi G. Swetha, Paul Livingstone, and Jayaraman Tharmalingam; Writing-review and editing: Raja Sreedharan, Paul Livingstone, Jayaraman Tharmalingam, Sudha Ramaiah, RC Theijeswini, and Anand Anbarasu; Supervision: Paul Livingstone, and Anand Anbarasu. All authors have read and agreed to the published version of the manuscript.
Corresponding authors
Ethics declarations
Ethics approval and consent to participate
Not applicable.
Consent for publication
Not applicable.
Conflict of interest
The authors have no relevant financial or non-financial interests to disclose.
Additional information
Publisher’s Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Rights and permissions
Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
About this article
Cite this article
Theijeswini, R., Basu, S., Swetha, R.G. et al. Prophylactic and therapeutic measures for emerging and re-emerging viruses: artificial intelligence and machine learning - the key to a promising future. Health Technol. 14, 251–261 (2024). https://doi.org/10.1007/s12553-024-00816-z
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s12553-024-00816-z